GTEx V6

The GTEx project is a large-scale effort to profile gene expression in a wide range of tissues and individuals using RNA-seq in combination with genotyping of the same individuals, enabling the detection of quantitative trait loci. In SlideBase, we were interested in overall expression patterns across tissues rather than genetics. As a result we created sliders corresponding to the median expression across individuals for 53 tissues in GTEx.

GTEx V6 Selector

Select genes using sliders.

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View detailed information about genes from GTEx V6.

    Data

    Register a free account at gtexportal.org to download the GTEx Analysis V6 gene median dataset used in SlideBase.

    Dataset filename: GTEx_Analysis_v6_RNA-seq_RNA-SeQCv1.1.8_gene_median_rpkm.gct.gz

    More on background and data here.

Documentation

SlideBase documentation on GTEx V6 dataset.

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