FANTOM5 Human Enhancer Tracks

Using statistical methods, we have defined several enhancer tracks used in Andersson et al. Most track sets are defined in the BED format and can be downloaded or viewed in the UCSC Genome Browser.

1. Extensive enhancers

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2. Enhancers specifically expressed in cells

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3. Enhancers specifically expressed in organs/tissues

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Download or View Tracks

  • Download the selected enhancer sets (from sections 1, 2 and 3) above as one BED file.
  • View the selected enhancer sets (from sections 1, 2 and 3) above in UCSC Genome Browse.

4. Enhancer Expression

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5. Enhancer - FANTOM Robust Promoter associations

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  • Enhancer - Promoter associations are obtained by correlating enhancer-promoter pairs within 500 kbases over cell type and organ facets and filtered by an adjusted correlation pvalue: FDR < 10-5 The enhancer-promoter associations are computed between enhancers and all FANTOM robust promoters. For enhancer-RefSeq promoter associations click HERE
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